PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21484.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 321aa    MW: 35715.8 Da    PI: 4.7341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21484.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.8e-11136179755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + ErrRR r+++++  Lr+l+P+      +K++Ka+i   Av Y+++Lq
  KHN21484.1 136 ISERRRRGRMKEKLYALRSLVPNI-----TKMDKASIIGDAVSYVHDLQ 179
                 78*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.586129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-17130202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16131194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.66E-13131183No hitNo description
SMARTSM003531.1E-14135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8135179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDVHEDTLKY MNDFELYDFV ADSNFDQFIN LIRGENEDAN CDHFGSDLIN DCFVNNQQQP  60
LLSPANPFDQ NNNNNNNDAV NVYDPSSTFS SFSCFDGELK GEGEEENDGE HSSGTTTTKN  120
ADGKPKLKTD RSKTLISERR RRGRMKEKLY ALRSLVPNIT KMDKASIIGD AVSYVHDLQA  180
QARKLKAEVA GLEASLLVSE NYQGSINNPK NVQVMARNIS HPNCKKIMQV DMFQVEERGY  240
LAKIVCNKGE GVAASLYRAL ESLAGFNVQN SNLATVGESF LLTFTLNVKG TEQEINLPNL  300
KLWVTGALLN QGFEFVASFP A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541980.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
SwissprotQ0V7X41e-104FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0B2QMQ60.0A0A0B2QMQ6_GLYSO; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
STRINGGLYMA13G39650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-104FER-like regulator of iron uptake
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]